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Academic Links
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Genomes and sequences
Complete Genomes

    • COGENT (COmplete GENome Tracking : a flexible data environment for computational genomics) EBI (UK)

    • Complete genomes NCBI (Haemophilius influenza, E. Coli, Mycoplasma genitalium)

    • Completed Genomes at the EBI EBI (UK)

    • Completed microbial genomes InfoBioGen (France)

    • Completed microbial genomes TIGR

    • Completely sequenced genomes Rockfeller (USA)

    • EMGLib (completely sequenced bacterial genomes and the yeast genome) PBIL (France)

    • Fully Sequenced Genomes Present In The Public DataBases GOLD (USA)

    • PEDANT (Protein Extraction, Description, and Analysis Tool) MIPS (more 200 genomes) (Germany)

    • E. Coli : Wisconsin (USA), see also Entrez (NCBI)

    • SACSO (Systematic Analysis of Completely Sequenced Organisms) Pasteur (French)

    • TIGR : Genomes (USA)

    • Yeast Genome Project (Complete genome) MIPS (Germany), see also Genome Viewer, see also Comprehensive Yeast Genome Database

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Proteome Analysis

    • GenQuiz EBI (UK)

    • Proteome analysis @ EBI (UK)

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By organisms, species, groups

  • Animals

  • Arabidopsis

    • AAtDB (Harvard) www (USA)

    • A Complete Arabidopsis Transcriptome MicroArray catma

    • Arabidopsis Gene Hunter (searches databases and web sites) TAIR (USA)

    • FLAGdb++ (integration and exploration around the Arabidopsis genome) InfoBioGen (French)

    • Arabidopsis Genomic RNAi Knock-out Line Analysis agrikola

    • Arabidopsis Information Resource (Maps, Databases, Tools,..) TAIR (USA)

    • Genomic Arabidopsis Resource Network GARNET (UK)

    • Arabidopsis data KAOS (Japan)

    • Arabidopsis Sequencing at Stanford (USA)

    • Links to Arabidopsis thaliana WWW sites and to SWISS-PROT entries Expasy

    • AthaMap (resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome) Braunschweig (Germany)

    • Fingerprint Database GSC (USA)

    • Flanking Sequence Tags InfoBioGen (French)

    • GABI-Kat (database of flanking sequence tags (FSTs) of T-DNA mutagenized Arabidopsis thaliana) Koeln (Germany)

    • Genoscope CNS (France)

    • Arabidopsis Beta-glucosidases and galactosidases Iowa (USA)

    • Arabidopsis Cytochromes P450 Biobase (Denmark)

    • Arabidopsis Cytochrome b5 Biobase (Denmark)

    • Arabidopsis Glucosyltransferases Biobase (Denmark)

    • Insertion database CSHL (USA)

    • Arabidopsis P450 Reductase Biobase (Denmark)

    • MATDB (MIPS Arabidopsis thaliana database) MIPS (Germany)

    • Arabidopsis Membrane Protein Library CBS (USA)

    • NASCArrays (a repository for microarray data generated by NASC's transcriptomics service) Nottingham (UK)

    • PAT (Proteins of Arabidopsis Thaliana Database) SDSC (USA)

    • ATIS (Arabidopsis Transposon Insertion Service) JIC (UK)

    • Functional genomics of P450 Illinois (USA)

    • Mutant Genes Oklahoma (USA)

    • Plasma membrane proteins (PPMdb) Ghent (Belgium)

    • Resistance-Gene-Like ESTs TAIR (USA)

    • SIGnAL Arabidopsis Gene Mapping Tool SIGAL (USA)

    • SpliceN EST Max-Planck (Germany)

    • Structural genomics (three-dimensional structure) CESG (USA)

    • ThalEstDB (EST Arabidopsis Thaliana) INRA (France)

    • Transposon Tagging PennState (USA)

    • The TIGR Arabidopsis thaliana Database ATDb (USA)

    • WashU project GSC (USA)

  • Bacillus Subtilis

    • ABC transport systems LCB (France)

    • Bacillus Subtilis NIST, see also Pasteur

    • Bacillus Subtilis 168 TIGR (USA)

    • Bacillus subtilis Genetics at the Royal Holloway London (UK)

    • DBTBS (promoters and transcription factors database) Tokyo (Japan), another link

    • MadBase (and BadBase an ACeDB version) INRA (France), see also Micado Main Menu

    • A Non-Redundant Database for Bacillus subtilis NRSub (Lyon)

    • Bacillus Subtilis : neighbouring genes and codon usage Versailles (France)

    • Links to B. subtilis WWW sites and to SWISS-PROT entries Expasy

    • Micado (prokaryotes and Bacillus subtilis) INRA (French)

    • PEDANT MIPS (Germany)

    • SPiD (Protein interaction Database) INRA (French)

    • Sporulation genes London (UK)

    • SubtiList Pasteur (French)

    • SRS : at HGMP (England)

  • C. elegans

    • AppaDB (an AcedB database for the nematode satellite organism Pristionchus pacificus) Tuebingen (Germany)

    • Cold Spring Harbor CSHL (USA)

    • GSC (USA)

    • The Sanger Centre www

    • UTSW C. elegans server www (Texas)

    • C. elegans EST NIG (Japan), see also GSC (USA)

    • C. elegans Mitochondrial genetics Sanger (UK)

    • Labial Homeobox Swiss Worm (Switzerland)

    • Links to C. elegans WWW sites and to SWISS-PROT entries Expasy

    • Nematode.net (a tool for navigating sequences from parasitic and free-living nematodes) Washington (USA)

    • NEMBASE (a resource for parasitic nematode ESTs) Edinburgh (UK)

    • RNAi in C. elegans New York (USA)

    • RNAi at @elegans (USA)

    • WashU project GSC (USA), see also Briggsae

    • WormBase Sanger (UK)

    • Human and Nematode Orthologs NCBI (USA)

    • Worm-Yeast Protein Comparison Stanford (USA)

  • Crayfish

  • Dictyostelium

  • Drosophila

    • Atlas of the Drosophila nervous system www (Freiburg)

    • DRES (Drosophila Related Expressed Sequences) TigemNet (Italy)

    • Berkeley Drosophila Genome Project BDGP (USA)

    • Ensembl (genomic sequence with features attached) Sanger-EBI

    • Entrez genome NCBI (USA)

    • European Drosophila Genome Project (EDGP) EBI (UK)

    • FlyBase (Indiana) www, see also Search (Harvard), see also ANGIS

    • FlyBase (mirror at EBI) EBI (UK)

    • FlyBase (mirror at Strasbourg) IBMC (France)

    • FlyBrain USA, see also Germany

    • FlyEx (database on gene expression in segmentation genetic network) New York (USA), another link St Petersburg (Russia)

    • FlyMine (integrated database for Drosophila and Anopheles genomics) Cambridge (UK)

    • FlyTrap (relational database of transposable element insertions) California (USA)

    • FlyNets (Annotated Database for Molecular Interactions) GIFTS (France)

    • FlyView (Muenster) www (image database on Drosophila development)

    • Index of Drosophila entries and their corresponding FlyBase cross-references Expasy

    • LBL Human Genome Center www

    • The Gene Interactions in the Fly Trans-World Server GIFTS (France)

    • The Interactive Fly (A cyberspace guide to Drosophila genes and their roles in development) SDB (USA)

    • MitoDrome (nuclear genes encoding proteins targeted to the mitochondrion) Bari (Italy)

    • The Drosophila P450 Site INRA (French)

    • SegNet (Segmentation Gene Networks) Russian Network

    • SOS-DGDB (DNA sequences annotated with regulatory protein binding sites) GIFST (France)

    • SpliceN EST Max-Planck (Germany)

    • Wnt genes in Drosophila Stanford (USA)

    • SRS - FlyClones - FlyGene - FlyRef - Flypeople InfoBioGen (French), see also HGMP (UK)

  • Fungi

    • CADRE (the Central Aspergillus Data REpository) Manchester (UK)

    • FGSC (Fungal Genetics Stock Center) Kansas (USA)

    • Fungal Cosmid and cDNA Sequencing Oklahoma (USA)

    • Fusarium sporotrichioides Oklahoma (USA)

    • Index of Mycoplasma genitalium strain G-37 chromosomal entries Expasy

    • Magnaporthe grisea NCSU (USA)

    • Mycoplasma genitalium : PEDANT MIPS (Germany)

    • Mycoplasma genitalium : Structural Assignments to MG Proteins Yale (USA)

    • Mycoplasma pneumoniae (Sequences, Metabolic Pathways) Heidelberg (Germany), see also Expasy

    • Mycoplasma pneumoniae : PEDANT MIPS (Germany)

    • Mycoplasma pulmonis (MypuList) Pasteur (French)

    • Mycor Web (E. globulus - P. tinctorius) INRA (France)

    • Neurospora genome project New Mexico (USA), see also MIPS (Germany)

    • Search CBS Filamentous Fungi database CBS (Denmark)

  • Human

    • AceView (genes. clones, ESTs) NCBI (USA)

    • Alternative Splicing (AS) Berlin (Germany)

    • Alternative Splicing Database (ASD) EBI (UK)

    • Alternative Splicing Gallery - ASG (bridging the gap between genome and transcriptome) North Carolina (USA)

    • AluGene (database of Alu elements incorporated within protein-coding genes) Tel Aviv (Israel)

    • Ensembl

    • GDB et OMIM ANGIS (Australia)

    • GDB and OMIM GenomeNet (Japan) www (DBGET)

    • GDB and OMIM Heidelberg (Germany)

    • GDB et OMIM (John Hopkins) www (Search by Keyword, Name, Gene name, Map location ...), mirror list

    • GDB and OMIM WEHI (Australia)

    • GDB and OMIM Weizman (Israel)

    • GENATLAS (genes, diseases, and markers) Paris (France)

    • Genew (the Human Gene Nomenclature Database) London (UK)

    • GENOTK (a human cDNA database) Otsuka (Japan)

    • HASDB (Human Alternative Splicing Database) UCLA (USA)

    • HGBASE (Human Genic Bi-Allelic SEquences) Interactiva (Germany)

    • HIB : database of annotated UniGene clusters MIPS (Germany)

    • HOWDY (integrated database) Tokyo (Japan)

    • HPRD (human protein reference database as a discovery resource for proteomics) HPRD

    • HUGE (Human Unidentified Gene-Encoded Large Proteins) Kazusa (Japan)

    • HugeIndex ZLab (USA)

    • International Protein Index (IPI : human, mouse proteomes) EMBL-EBI (UK)

    • LocusLink (NCBI RefSeq : a non-redundant set of reference sequences, including constructed genomic contigs, mRNAs, proteins) NCBI (USA)

    • MITOMAP (mitochondrial genome database) Emory (USA)

    • OMIM NCBI (USA), search, see also Entrez

    • STACK (Sequence Tag Alignment and Consensus Knowledgebase) SANBI (South Africa)

    • STRBase (Short Tandem Repeat DNA) NIST (USA)

    • TIGR Expressed Gene Anatomy Database EGAD (USA)

    • TIGR Human Gene Index HGI (USA)

    • UDB (Unified Database for Human Genome Mapping) Weizman (Israel)

    • Unique Human Gene Sequence Collection (Search and list by chromosome) UniGene (NCBI : USA), see also : alignment ProtEST

    • CEPH (Genethon) www (Physical Map, YAC), see also

    • CHLC (Cooperative Human Linkage Center) NCI (USA)

    • Center for Medical Genetics (genetics maps, markers, CEPH..) CMG (USA)

    • Fingerprint database GSC (USA)

    • GenLink (GenotypesDB, TelDB, Meiotic Maps) WU (USA)

    • A Gene Map of the Human Genome (Transcript map : Science 96) NCBI (USA)

    • Gene Map NCBI (USA)

    • Genome Browser UCSC, another link (USA)

    • Genome Map 98 EBI, Map 99 (UK)

    • Genome map viewer NCBI (USA), see also Tour Human

    • GeneNest Index (EST Clustering Projects) Max-Planck (Germany)

    • Genome Project BAC and Accession Maps GSC (USA)

    • HuGeMap database InfoBioGen (France)

    • Human BAC Mapping Data MIT (USA)

    • Human Gene Nomenclature Database Search UCL (UK)

    • Human Genome Guide NCBI (USA)

    • Human Genome Project (Chromosome, RHT, EST, Polymorphism) Sanger (UK), see also humace

    • Human Genome Sequencing NCBI (USA)

    • HUNT (Human Novel Transcripts) HRI (Japan)

    • BCMGC (Houston) www

    • HPID (Human protein interaction database) Daejeon (Korea)

    • LBL Human Genome Center www (USA)

    • LDB2000 (Sequence-based Integrated Maps of the Human Genome) Southampton, see also LDB (UK)

    • SHGC center (Mapping, Sequencing, RH server) Stanford (USA)

    • Human Genome Project Working Draft UCSC (USA)

    • SRS - OMIM (linked libraries : OMIM) : all the [SRS] servers, except ABC, BEN, DISC, EBI, IUBio, SEQNET, Weizman

    • SRS - CPGISLE (linked libraries : CPGISLE Human CpG-island database) : all the [SRS] servers, except ABC, Biozentrum, DISC, EMBL, IUBio, WEHI, Weizman

    • SRS - MIMMAP (linked or genomic libraries : MIMMAP) : all the [SRS] servers, except ABC, Ben, DISC, EMBL, IUBio, SEQNET, WEHI, Weizman

    • SRS - HUMREP : CMBI (Nijmegen)

    • SRS - RHXX (mapping libraries : RHDB, RHEXP, RHPANEL) : at EMBL-EBI, Sanger Centre (England), InfoBioGen (France), WEHI (Australia)

    • SRS - UNIGENE : at InfoBioGen (France), Sanger Centre (England), WEHI (Australia), MIPS (Germany)

    • SRS - VIRGIL : at InfoBioGen (France), WEHI (Australia)

    • Chromosomes

      • Chromosome Launchpad ORNL (USA)

      • Chromosomes 1-22, X, Y UniGene (NCBI : USA), see also UDB (Weizmann), see also Annotation Database, see also HUGO

      • Chromosomes 1, 6, 9, 10, 13, 20, 22, X Sanger (UK)

      • Chromosomes 1, 2, 3, 4, 5, 7, 8, 12, 13, 14, 16, 22, X, UL GSC (USA)

      • Chromosomes 1, 9, 11, 22 Oklahoma (USA)

      • Chromosomes 5, 16, 19 JGI (USA)

      • Chromosome 1 Rockefeller (USA), see also Protein sequence entries in SwissProt Expasy

      • Chromosome 2 : Protein sequence entries in SwissProt Expasy

      • Chromosome 3 UTHSCSA, see also Baylor (USA), see also Protein sequence entries in SwissProt Expasy

      • Chromosome 4 Stanford (YAC STS-content map), see also Protein sequence entries in SwissProt Expasy

      • Chromosome 5 : Protein sequence entries in SwissProt Expasy

      • Chromosome 6 Sanger (UK), see also Protein sequence entries in SwissProt Expasy, see also MHC Haplotype Project Sanger

      • Chromosome 7 NHGRI (USA), see also Toronto (Canada), see also ACEDB GSC, see also Protein sequence entries in SwissProt Expasy

      • Chromosome 8 UTHSCSA, see also Protein sequence entries in SwissProt Expasy

      • Chromosome 9 Cambridge see also report on 3rd International Chromosome 9 Workshop, see also Protein sequence entries in SwissProt Expasy

      • Chromosome 10 Protein sequence entries in SwissProt Expasy

      • Chromosome 11 Protein sequence entries in SwissProt Expasy

      • Chromosome 12 EGC, see also Baylor, see also Protein sequence entries in SwissProt Expasy

      • Chromosome 13 Protein sequence entries in SwissProt Expasy

      • Chromosome 14 Genoscope, see also Protein sequence entries in SwissProt Expasy

      • Chromosome 15 Protein sequence entries in SwissProt Expasy

      • Chromosome 16 LANL(Los Alamos), see also TIGR (USA), see also Protein sequence entries in SwissProt Expasy

      • Chromosome 17 Weizmann (Israeli), see also Protein sequence entries in SwissProt Expasy

      • Chromosome 18 Boston (USA),see also Protein sequence entries in SwissProt Expasy

      • Chromosome 19 LLNL see also DNA Repair (California), Protein sequence entries in SwissProt Expasy

      • Chromosome 20 Sanger (UK), see also Protein sequence entries in SwissProt and OMIM Expasy

      • Chromosome 21 CSMC (Los Angeles), see also Max-Planck, see also CEPH (France), see also Tokyo, see also ERI (USA), see also Weizmann, see also Protein sequence entries in SwissProt Expasy

      • Chromosome 22 Sanger centre (UK), see also GAIA 22, see also Protein sequence entries in SwissProt Expasy, see also GALA (Genome Alignment and Annotation Database) Pennsylvania

      • Chromosome X Max Planck (Deuchtland), see also Washington, see also Baylor, see also Protein sequence entries in SwissProt Expasy

      • Chromosome X : IXDB (integrated database) Berlin (Germany), see also MPI

      • Chromosome Y : Protein sequence entries in SwissProt Expasy

      • Human-Mouse Homology chromosome regions and genes Softberry (USA)

      • Analysis of triplet repeats CCMB (India)

      • Acquired Chromosome Abnormality Database HGMP (UK)

      • Chromosomal breakpoints in human cancer NCBI (USA)

      • MITOMAP: A database of the "Report of the committee on human mitochondrial DNA" Emory (Georgia)

      • Cytogenetics Gallery Washington (USA)

    • ADB (Albinism database) CBC (USA)

    • ALFRED (Allele Frequency Database) Yale (USA)

    • ALPSbase (Autoimmune Lymphoproliferative Syndrome) NHGRI (USA)

    • APDD (the Archaeal Pathogen Detection Database) Sydney (Australia)

    • ARED (AU rich element containing mRNA database) Riyadh (Saudi Arabia)

    • Atlas of Genetics and Cytogenetics in Oncology and Haematology Villejuif (French)

    • BodyMap (Anatomical Expression Database of Human Genes) IMCB (Japan)

    • BreastDB - Breast cancer drug resistance screen Database NCI (USA)

    • The Cancer Genome Anatomy Project (CGAP) NCBI (USA)

    • Clone Set NHGRI (USA)

    • Connexin-deafness IRO (Spain)

    • COSMIC (somatic mutations in cancer) Sanger (UK)

    • DHMHD - The Dysmorphic Human-Mouse Homology Database HGMP-RC (UK), see also Human syndromes

    • Entrez : Cancer Chromosomes NCBI (USA)

    • G2D (candidate genes for mapped inherited human diseases) EMBL (Germany)

    • GeneCards (functions of genes and their products) Weizmann, see also Heidelberg, see also IcNet, see also CMBI (Netherlands)

    • GENDIAG (Genetic Syndromes and Abnormalities in Development in Man) InfoBioGen (French)

    • GeneDis (Human Genetic Disease Database) Tel Aviv (Israel)

    • Genes and Diseases NCBI (USA), see also DNA Sciences

    • Genetic Disorders by Chromosome GDB (USA)

    • GeneTrap (modeling human disease gene trap resource) Toronto (Canada)

    • HapMap (expected to be a key resource for researchers to use to find genes affecting health, disease, and responses to drugs and environmental factors) IHMP

    • Hembase (human erythroid transcriptome database) Rockville Pike (USA)

    • Hera (human endoplasmic reticulum resident proteins database) Montreal (Canada)

    • HERVd (human endogenous retroviruses) Prague (Czech Republic)

    • HIV1 - Human protein interaction database NIAID (USA)

    • Human Epigenome Project (aims to identify and catalogue Methylation Variable Positions (MVPs)) Sanger (UK)

    • Human EST Project WashU-Merck (USA), see also WashU-NCI CGAP EST Project

    • Human Genome Variation Database (HGVBASE) CGR (Sweden)

    • Human Hexosaminidase A mutation db (Tay-sachs disease) MCH (Canada)

    • Human Short Insertion Deletion Polymorphisms CMG (USA)

    • Human and Mouse Transcribed Sequences (DOTS) CBIL (USA)

    • Human Full Length cDNA Database KDRI (Japan)

    • Human leukemia cell lines proteome Paris13 (French)

    • Human Plasma Membrane Receptome (HPMR) Stanford (USA)

    • Human proteins with sequence variants Expasy

    • Human STS vs YAC Screening Database MIT (USA)

    • Human Radiation Hybrid (RHdb) EBI

    • Human Radiation Hybrid Mapping Sanger, see also GB4-RH, see also G3-RH

    • Human Repetitive Elements NCBI (USA)

    • SKY and CGH Database (Spectral Karyotyping (SKY) and Comparative Genomic Hybidization (CGH)) NCBI (USA)

    • Glovar (genomic variation database) Sanger (UK)

    • Human SNP (database of single nucleotide polymorphisms) NCBI, see also MIT, see also UW-FHCRC

    • Leelab SNP Database UCLA (USA)

    • Human PicSNP (Non-Synonymous SNP) UMIN (Japan)

    • SNP allele frequencies Chicago (USA)

    • SNPs in the Context of Transcripts, ORFs and Protein Motifs (Gene Viewer) NCI (USA)

    • topoSNP (a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association) Illinois (USA)

    • SNP500Cancer (a public resource for sequence validation and assay development for genetic variation in candidate genes) NCI (USA)

    • Human Transcript Database Baylor (USA)

    • EGAD - The Expressed Gene Anatomy Database TIGR (USA)

    • EICO (finding disease-related imprinted genes) Riken (Japan)

    • EMD - Human Emerin mutation db (Emery-Dreifuss muscular dystrophy) Cambridge (UK)

    • HbVar (Human Hemoglobin Variants and Thalassemias) Pennsylvania (USA)

    • LDB - The genetic Location Database Southampton (UK)

    • LOH (loss of heterozygosity maps from over 800 cancer cell lines and normal samples) Sanger (UK)

    • The Human Gene Mutation Database Cardiff (PMDB : Point Mutation DB, MDDB : Micro-Deletion DB)

    • IL2RGbase (Database of Mutations Causing Human X-Linked SCID) NHGRI-NIH (USA)

    • Immunodeficiency Mutation Databases Helsinki (Finland)

    • Lowe Syndrome Mutation Database (OCRL1 gene) NHGRI (USA)

    • MHC database (DNA and clinical data) NCBI (USA)

    • Mutation registry for X-linked agammaglobulinemia BTKbase (Finland), see also Tampere

    • NCL mutations (Neuronal Ceroid Lipofuscinoses) UCL (UK)

    • Neuropathology Atlas HNM (Hungary)

    • Somatic p53 mutations in human tumors and cell lines IARC (France)

    • SpliceN EST Max-Planck (Germany)

    • EASED (Extended Alternatively Spliced EST Database) Berlin (

    • UMD (Universal mutation database : APC, FBN1, LDLR, MEN1, p53, SUR1, VHL, WT1) Necker (French)

    • VMD2 Mutation Database Wurzburg (Germany)

    • WRN mutation db (Werner disease) Washington (USA)

    • WT1-Mutation Database Necker (France)

    • X-ALD gene mutation database Amsterdam (Netherlands)

    • The Whole Brain Atlas Harvard (clinical information with magnetic resonance (MR), x-ray computed tomography)

    • Homophila (human disease to drosophila genes) SDSC (USA)

    • Human cDNA clones homologous to Drosophila mutant genes TIGEM (Italy)

    • Godzilla (Compare the Human and Mouse Genomes) Berkeley (USA)

    • Human/Mouse Homology Relationships NCBI (USA)

    • SLAM (submit pairs of syntenic sequences for gene annotation and alignment) Berkeley (USA)

    • Whole Genome Human/Mouse Homology Penn State (USA)

    • Human and Nematode Orthologs NCBI (USA)

  • Insect

  • Mosquitos

  • Mouse

    • Anatomical Dictionary Browser Jackson Lab (USA)

    • Atlas Project (Genex) MRC (UK)

    • Atlases of Rodent Tumour Pathology PathIT (USA)

    • Bay Area Resource of Mouse Mutations in Secreted and Membrane Proteins Berkeley (USA)

    • BodyMap (Anatomical Expression Database of Mouse Genes) IMCB (Japan)

    • Chromosomes

      • Chromosome 11 BCM (USA)

    • Cytogenetic Map Image NIAI (Japan)

    • EICO (finding disease-related imprinted genes) Riken (Japan)

    • EST (WashU Project) GSC (USA)

    • FANTOM (functional annotation of mouse) Riken (Japan)

    • FREP Database (Functional Repeats in Mouse cDNAs) Riken (Japan)

    • GeneNest Index (EST Clustering Projects) Max-Planck (Germany)

    • GenePaint (an atlas of gene expression patterns in the mouse embryo) Max Planck Institute (Germany)

    • Genetic Map (MIT) www, another link, see also GPMMG

    • GeneTrap (modeling human disease gene trap resource) Toronto (Canada)

    • International Protein Index (IPI : human, mouse proteomes) EMBL-EBI (UK)

    • Portable Dictionary of the Mouse Genome (University of Tenessee) Nevernet

    • Ensembl (genomic sequence with features attached) Sanger-EBI

    • The European Collaborative Interspecific Mouse Backcross EUCIB (HGMP : UK, Pasteur : France)

    • Genome - MGD (Jackson Laboratory) www, see also CMBI (Netherlands), see also Wehi (Australia)

    • MGD entries in Swiss-Prot Expasy (Switzerland)

    • MICER (Mutagenic Insertion and Chromosome Engineering Resource) Sanger (UK)

    • Mitochondrial and Other Useful SEquences Munich (Germany)

    • Mouse RH Map MIT (USA)

    • Pathbase (European database of mutant mouse pathology) EMMPD

    • Rat Brain Atlas Project GWER (Switzerland)

    • Rat EST Project Iowa (USA)

    • Rat Genome Database (RGD) MCW (USA)

    • Rat Genome Resources NCBI (USA)

    • Rat Map WWW Server Goteborg

    • Rattus norvegicus genome view NCBI (USA)

    • READ (Riken Expression Array Database) Riken (Japan)

    • RTCGD (mouse retroviral tagged cancer gene database) NCIFCRF (USA)

    • SAGE (public libraries generated by the Serial Analysis of Gene Expression) Prague (Czech Republic)

    • StemCellDatabase (SCDb) Princeton (USA)

    • SIGTR (Sanger Institute Gene Trap Resource) Sanger (UK)

    • SNPs in the Context of Transcripts, ORFs and Protein Motifs (Gene Viewer) NCI (USA)

    • SpliceN EST Max-Planck (Germany)

    • TIGR Mouse Gene Index MGI (USA)

    • Unique Mouse Sequence Collection UniGene (NCBI : USA), see also rat

    • Base des transgeniques (TBASE) Jackson Lab (USA)

    • Cytogenetic Correspondence in the Linkage Map (Huamn, Pig, Cattle, Sheep, Rat) NIAI (Japan)

    • DHMHD - The Dysmorphic Human-Mouse Homology Database HGMP-RC (UK)

    • The Gene Expression Database (GXD) Jackson, search form (USA)

    • Mouse Tumour Biology Data Base (MTD) Jackson (USA)

    • Gene Knockouts Database www (mouse phenotypes rendered by the knockout of various molecules) (USA)

    • Godzilla (Compare the Human and Mouse Genomes) Berkeley (USA)

    • Human and Mouse Transcribed Sequences (DOTS) CBIL (USA)

    • Human/Mouse Homology Relationships NCBI (USA)

    • SLAM (submit pairs of syntenic sequences for gene annotation and alignment) Berkeley (USA)

    • Whole Genome Human/Mouse Homology Penn State (USA)

    • Mutant Mouse Database ORNL (USA)

    • SKY and CGH Database (Spectral Karyotyping (SKY) and Comparative Genomic Hybidization (CGH)) NCBI (USA)

    • ARB Rat Genetic Database (Arthritis and Musculoskeletal and Skin Diseases) NIH (USA)

  • Parasites

    • CryptoDB (the Cryptosporidium genome resource) Georgia (USA)

    • Filarial Genome Network SCDM (USA), mirror at ED (UK)

    • Kinetoplast Minicircle Sequence Database EBI (UK)

    • Leishmania Genome Network EBI (UK), voir aussi EST (WashU project) GSC (USA)

    • Malaria Database Melbourne (Australia)

    • Malaria Genetics Section NCBI (USA)

    • Malarial Genome Project Sanger (UK), see also Stanford (USA)

    • Full-Malaria (an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species) Tokyo (Japan)

    • Malaria Metabolic Pathway Jerusalem (Israel)

    • Parasite-genome (Sequences, Codon Usage, ESTs) EBI (UK), see also Internet Resources and Contacts, see also UCLA (USA)

    • Parasite Databases of Clustered ESTs CBIL (USA), see also ApiESTDB

    • Parasite-genome EBI (UK)

    • Parasites proteome analysis EBI (UK)

    • Plasmodium falciparum Florida (USA)

    • Plasmodium falciparum (PlasmoDB) UPENN (USA)

    • Toxoplasma Database of Clustered ESTs CBIL (USA), see also EST (WashU project) GSC

    • Toxoplasma gondii ToxoDB

    • Trypanosoma brucei Cambridge (UK)

    • Trypanosoma cruzi Pasteur (French), see also Uppsala (Sweden), see also TcruziDB Georgia (USA)

  • Plants

    • AceDB CropNet (UK)

    • Angiosperm DNA C-Values Database RBG (UK)

    • Antirrhinum majus Koln (Germany)

    • BeanGenes Database (USA)

    • BeanRef CNR (Italy)

    • Brassica UK CropNet (UK)

    • Cotton DB USDA

    • Dendrome (Forest tree database) California (USA)

    • Erwinia carotovora (plant pathogen) Sanger (UK)

    • GrainGenes (Small grains and Sugarcane) INRA (France)

    • MaizeDB www (Missouri)

    • MaizeGDB (the community database for maize genetics and genomics) Iowa (USA)

    • Maize Gene Discovery, DNA Sequencing and Phenotypic Analysis Stanford (USA)

    • Maize Mapping Project Missouri (USA)

    • c-Map (comparative mapping maize-rice) Missouri (USA)

    • Mendel Database (photosynthetic organisms, organelle genomes and plant viruses) Stanford (USA)

    • ncRNAs (noncoding RNAs in plants) Michigan (USA)

    • PhytoProt (a database of clusters of plant proteins) Genoplante (French)

    • PLACE (cis-acting regulatory DNA elements db) DISC (Japan)

    • PlantCARE (cis-acting regulatory element database) Gent (Belgium)

    • PlantGDB (plant genome database and analysis tools) Iowa (USA)

    • Plant Genomes Databases Cornell

    • PlantProm DB (promoter sequences) London (UK)

    • Plant Repeat Databases TIGR (USA)

    • PlantSat (Plant satellite DNA) IPMB (Czech Republic)

    • Plant snoRNA Database (small nucleolar RNAs) SCRI (UK)

    • PLMItRNA/SRS (mitochondrial tRNAs and tRNA genes) Bari (Italy)

    • BGI-RIS (an integrated information resource and comparative analysis workbench for rice genomics) Beijing (China)

    • Rice Genome Research AFFRC (Japan)

    • Rice Genome Sequencing USIRGS (USA)

    • Rice Knowledge Bank IRRI (USA)

    • Rice Pipeline (a unification tool for plant functional genomics) Ibaraki (Japan)

    • Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis Tokyo (Japan)

    • Rice-research Monsanto (USA)

    • Solanaceae Genomics Project Cornell (USA)

    • Sorghum bicolor Texas (USA)

    • TIGR Rice Gene Index OGI (USA), see also Rice genome

    • SoyBase Iowa, see also Cornell

    • SGMB (Soybean genomics and microarray database) USDA-ARS (USA)

    • Search of EST Analysis Files CBC (Minnesota) database server for similarity analysis results for cDNA/EST sequences.

    • TropGENE (database of tropical crops) Cirad (French)

    • ZmDB (Maize Genome database) NSF (USA)

  • Prokaryotes

    • BIBI (Bio informatic bacterial identification) PBIL (French)

    • EnteriX (Visualization Tools for Bacterial Genome Alignments) Pensylvania

    • FusionDB (database for in-depth analysis of prokaryotic gene fusion events) IGS (French)

    • GeConT (gene context analysis) Morelos (Mexico)

    • Islander (Prophages Incorporated into Bacterial Genomes) Indiana (USA)

    • IslandPath (aiding detection of genomic islands in prokaryotes) Burnaby (Canada)

    • MICdb (Prokaryotic Microsatellites Database) Hyderabad (India)

    • ORF and sequences retriever U-ParisSud (French)

    • ORFan database Beer-Sheva (Israel)

    • Phydbac (display phylogenomic profiles of bacterial protein sequences) IGS (French)

    • PRODORIC (prokaryotic database of gene regulation) Braunschweig (Germany)

    • Bacterial Nomenclature up-to-date DSMZ (Germany)

    • Bacterial Polysaccharide Gene Database Sydney (Australia)

    • Bacterial Quorum Sensing Nottingham (UK)

    • Completed and Uncompleted Microbial Genomes at InfoBioGen (France)

    • Micado (prokaryotes and Bacillus subtilis) INRA (French)

    • Microbial Genome Database for Comparative Analysis MBGD (Japan)

    • Microbial Genomes at Sanger (UK)

    • Microbial Genomes at JGI (USA)

    • Microbial Genome Viewer Nijmegen (The Netherlands)

    • Multi Locus Sequence Typing MLST

    • Genomic Threading (Haemophilus influenzae, Mycoplasma genitalium and Methanococcus jannaschii) Warwick (UK)

    • Homologous Bacterial Genes Database PBIL (France)

    • PGTdb (Prokaryotic Growth Temperature Database) DLS (Taiwan)

    • SEEBUGS Microbial Genome Analysis (Concordance, Subtraction, Cluster, Neighbors) Rutgers (USA)

    • Archaeoglobus fulgidus TIGR (USA)

    • Bacterial Genome (Salmonella typhimurium, Salmonella paratyphi, AKlebsiella pneumoniae) GSC (USA)

    • Bacteroides Carolina (USA)

    • Borrelia burgdorferi (Strain list and Genetic and Physical maps) Pasteur, see also TIGR (USA)

    • Bordetella (parapertussis, bronchiseptica, pertussis) Sanger (UK)

    • Buchnera iBGD (Japon), see also